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COMO Documentation
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Overview
Getting Started
Example Workflow
Flow Charts
Resources
Docker Installation Method
Overview
Installing Docker
Pulling the Container
Obtaining a Gurobi License
Starting the Container
Conda Installation Method
Overview
Conda/Mamba Installation
Clone COMO Repository
Install Dependencies
Obtaining a Gurobi License
Start COMO
API Arguments
Arguments Overview
Python Arguments
Create Context Specific Model
Disease Analysis
Knockout Simulation
Merge Omics
Proteomics Gen
RNA Seq Gen
RNA Seq Preprocess
Flow Charts
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Step 1: Collect and analyze data
Step 2: Create tissue-specific or cell-type specific models
Step 3: Identify disease related genes by analyzing transcriptomic data of patients
Step 4: Identification of drug targets and repurposable drugs