This is an overview of how arguments work in COMO
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What are Arguments?
Arguments in COMO are the primary method of modifying settings. They are identical to command line arguments. The first argument is always the name of the script to be run. The rest of the arguments are the arguments that you want to pass to your COMO program. The pages listed here serve to explain the arguments that are available for each script.
As an example, if we wanted to enter the --taxon-id into a script, we would use the following format:
python3 script_name.py --taxon-id 9606
| Argument | Description |
|---|---|
| python3 | Execute python from the command line |
script_name.py |
The name of the script to execute |
--taxon-id 9606 |
The taxon ID to be used in COMO |